This machine is running Genome browser to display various projects that are inspired by the runs of Roche 454 GS-FLX platform that we have. An example database located here (user name is guest and password is guest) represents the Hoatzin genomic DNA reads and Aramus cDNA assemblies produced by two different assemblers mapped against the chicken reference genome.
Here are various projects related to Staphylococcus strains and sources of their resistance to various environmental factors and virulence.
- Staphylococcus PS47s strain
- Staphylococcus H29 strain
- Staphylococcus PB32 strain
- Staphylococcus MM25_09 strain
- Staphylococcus MM61_09 strain
- Staphylococcus MM66_09 strain
- Staphylococcus MM66_4_09 strain
- Staphylococcus MV8_09 strain
The other projects (many have restricted access):
- Drosophila melanogaster transcriptome reads mapped to the reference genome
- Aedes aegypti transcriptome reads mapped to the reference genome
- TB disease progression cow transcriptome reads mapped to the reference genome
- Cryphonectria parasitica reads mapped to the reference genome
- Cryphonectria parasitica v.2 reads mapped to the reference genome
- Hoatzin 454 FLX reads mapped to assembled Hoatzin MT genome
- Hoatzin 454 FLX reads mapped to chicken genome
- Hoatzin 454 FLX reads mapped to zebra finch genome
- Reads from New Mexico outbreak of Mycobacterium bovis mapped against the AF2122/97 complete M.bovis reference genome
- NCGR Illumina cow transcriptome reads from the animal stimulated with TB mapped to cow reference genome
- Vibrio fischeri strain JRM200 mapped to reference genomes
- Vibrio fischeri strain 5C mapped to reference genomes
- Vibrio fischeri strain EM17 mapped to reference genomes
- Vibrio fischeri strain SA1G mapped to reference genomes
- Vibrio fischeri strain CB37 mapped to reference genomes
The Microsatellites related projects :
- Poppy EST microsatellites project with prediced SSRs (no access restrictions)
- Euphydryas anicia cloudcrofti genomic DNA microsatellites project with prediced SSRs
- Second run genomic DNA microsatellites project with prediced SSRs
- Opisthocomus hoazin microsatellites SSRs
More projects are coming soon!!
Support : This work was supported in part by NSF award # DBI-0821806 to P. Houde.